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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PO210_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARASLIQPG LWALLLLQAV GPAVAAKLNI PKVLLPFTRA TRVNFTLEAS EGCYRWSSTR  60
   61 PEVASIEPLG SSEQQCSQKA VVQARLTQPA RLTSIIFAED ITTGQVLRCD AIVDLIHGIQ 120
  121 IVSTTRELYL EDSPLELKIQ ALDSEGNTFS TLAGLVFDWT IVKDTEANGF SDSHNALRIL 180
  181 TFLESTYIPP SYISEMEKAA KQGDTILVSG MKTGSSKLKA RIQEAVYKNV RPAEVRLLIL 240
  241 ENILLNPAYD VYLLVGTSIH YKVQKIRQGK ITELSMPSDQ YELQLQNSIP DPQGDPARPV 300
  301 AVLTQDTSRV TAMQMGQSNL VLGHRSIRMQ GASRLPNSTI YVVEAGYLGF TVHPGDRWVL 360
  361 ETGHLYAVTI EVFDRSSNKV YPSDNIRIEA VFPAEFFEVL SSSQNGSYHH VRAIQSGQTT 420
  421 ISASLTSVVD QDGGVHVLQV PVWNQQEVDI HIPITLYPSI LTFPWQPKTG AYQYTIKAHG 480
  481 GSGNFTWSSS SYMVATVTVK GVMTTGGDTG LSVIRAHDVQ NPLHFGEMKV YVIEPSSMEF 540
  541 APCQVEARVG HTLELPLTIS GLMPGGSSEV VTLSDCSHFD LVVEVENQGV FQPLPGRLPP 600
  601 GPEHCSGVKV RADAQGSTTL LVSYTHGHVH LGAKITLAAY LPLKAVDPSS VAVVTLGSSK 660
  661 EMLFEGGPRP WVLEPSKFFR NVTSEDTGSI SLSLLGPPAS RNYQQHRVLV TCQALGEQVI 720
  721 ALSVGNRPSL SNPFPAVEPT VVKSVCAPPS RLTLMPVYAL PQLDLSCPLL QQNKQVVPVS 780
  781 SHRNPLLDLG AYDQQGRRFD NFSSLSIQWE SFRPLLASIE VDQPMQLVSQ DDGNGQKKLH 840
  841 GLQTVSVHEA SGTTAISATA TGYQQSHLSA AGVKQLRDPL VPVSASIELI LVEDVRVSPE 900
  901 EVTIYNHPGV QVELHITEGS GYFFLNTSTQ DIINVAYQDT RGVAMVHPLF PGSSTVMVHD 960
  961 LCLTFPAPAK ATIHVSDIQE LYVRVVDKVE IGKAVKAYVR VLDFYKKPFL AKYFTFMDLK1020
 1021 LRAASQIITL VTLDEALDNY TATFLVHGVA IGQTSLSASV TDKSGQRVSS TAQQIEVFPP1080
 1081 FRLIPRKVTL IIGAMIQITS EGGPQPQSNI LFSINNESVA AVSSAGLVRG LMVGNGSVLG1140
 1141 VVQAVDAETG KVIIVSQDHV EVEVLQLQAV RIRAPITRMR TGTQMPVYVT GITSNQSPFS1200
 1201 FGNAVPGLTF HWSVTKRDVL DLRGRHHEVS IRLSPQYNFA MNVHGRVKGR TGLRVVVKAL1260
 1261 DPTAGQLHGL GKELSDEIQI QVFEKLRLLN PEVEAEQILM SPNSFIKLQT NRDGAAILSY1320
 1321 RVLDGPEKAP IVHIDEKGFL VSGSGIGVST LEVIAQEPFG TNQTVLVAVK VSPISYLRIS1380
 1381 MSPVLHTQHK EVLTALPLGM TVTFTVHFHD SSGDIFHAHN SDLNFATNRD DFVQIGKGAT1440
 1441 NNTCIIRTVS VGLTLLHVWD VEHLGLSDFV PLPVLQAITP ELSGAVVVGD ILCLASVLIS1500
 1501 LGGVSGTWSS SAGNVLYVDP KTGVAIARDA GPVTVYYEIA GHLKTFKEIV VVTPQKIVAR1560
 1561 RLHATQTSIQ EATASKVTVS VGDRSSNLLG ECSSAQREAI EALHPESLIS CQLQFKQDVF1620
 1621 DFPARDIFSV EPGFDTALGQ YLCSVTMHRL TDKQLKHLNM KKTSLAVTAS MPSSRTSVEK1680
 1681 VGAEVPFSPG LYANQAEILL SNHYPSSEVK IFGAVEILEN LEVRSGSPAV LASVKEKSFG1740
 1741 LPSFITYTVG VLDPTAGSQG PLSTALTFSS PATNQAITIP VTVAFVLDRR GPGPYGASLL1800
 1801 SHFLDSYQVM FFTFFALLAG TAVTIIAYHT VCAPRELASP LALTPHASPQ HSPHYLASSP1860
 1861 TAFNTLPSDR KASPPSGLWS PAYASH

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