YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27690924
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.84
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGDSSLVCA VSLLCACQQS YFALQVGRVR LKYKIAPPAV TGSLEFERIF RAQQNSLEFY  60
   61 SVFIISLWMA GWYFNQVFAT CLGLLYIYAR HKYFWGYAEA AEKRIIGFRL SLGILALLTV 120
  121 LAVLGVASRF LDEYLDFHVA KKLKRPF

Type	Start	End	Confidence
Signal Peptide	1	19	0.83
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	67	0.87
Transmembrane Helix	68	89	0.91
Cytoplasmic	90	104	0.95
Transmembrane Helix	105	127	0.91
Non-Cytoplasmic	128	147	0.91