YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56789135, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.88
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLVLSPVP CHWLMFLLLL LSGEPVPAMT KSDQPPIFQG SPCSKIWQHP RFAAKKRSSM  60
   61 VKFHCHTDYS GVMTWFRQKG NQRPQELFPE DGHISQTRNG SVYTLTLQNI QYEDNGIYFC 120
  121 QQKCNSTEPD VTDGCGTELL VLGFSTLDQL KRRNTLKDGI IMIQTLLIIL FIIVPIFLLL 180
  181 DKDDSKAGME EDHTYEGLNI DQTATYEDIV TLRTGEVKWS VGEHPGQE

Type	Start	End	Confidence
Signal Peptide	1	28	0.98
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	159	0.97
Transmembrane Helix	160	180	0.86
Cytoplasmic	181	228	0.88