YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FZD8_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	27	0.98
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	273	0.99
Transmembrane Helix	274	297	0.92
Cytoplasmic	298	308	0.91
Transmembrane Helix	309	329	0.92
Non-Cytoplasmic	330	342	0.83
Transmembrane Helix	343	364	0.82
Cytoplasmic	365	387	0.75
Transmembrane Helix	388	422	0.76
Non-Cytoplasmic	423	482	0.65
Transmembrane Helix	483	505	0.91
Cytoplasmic	506	525	0.93
Transmembrane Helix	526	550	0.89
Non-Cytoplasmic	551	582	0.96
Transmembrane Helix	583	603	0.94
Cytoplasmic	604	617	0.85
Transmembrane Helix	618	639	0.63
Non-Cytoplasmic	640	684	0.48

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWGYLLEVT SLLAALAVLQ RSSGAAAASA KELACQEITV PLCKGIGYNY TYMPNQFNHD  60
   61 TQDEAGLEVH QFWPLVEIQC SPDLKFFLCS MYTPICLEDY KKPLPPCRSV CERAKAGCAP 120
  121 LMRQYGFAWP DRMRCDRLPE QGNPDTLCMD YNRTDLTTAA PSPPRRLPPP QPGEQPPSGS 180
  181 GHSRPPGARP PHRGGSSRGS GDTAAAPPSR GGKARPPGGG AAPCEPGCQC RAPMVSVSSE 240
  241 RHPLYNRVKT GQIANCALPC HNPFFSQDER AFTVFWIGLW SVLCFVSTFA TVSTFLIDME 300
  301 RFKYPERPII FLSACYLFVS VGYLVRLVAG HEKVACSGGA PGAGGAGGAG GAATAGAGAA 360
  361 GAGASSPGAR GEYEELGAVE QHVRYETTGP ALCTVVFLLV YFFGMASSIW WVILSLTWFL 420
  421 AAGMKWGNEA IAGYSQYFHL AAWLVPSVKS IAVLALSSVD GDPVAGICYV GNQSLDNLRG 480
  481 FVLAPLVIYL FIGTMFLLAG FVSLFRIRSV IKQQGGPTKT HKLEKLMIRL GLFTVLYTVP 540
  541 AAVVVACLFY EQHNRPRWEA THNCPCLRDL QPDQARRPDY AVFMLKYFMC LVVGITSGVW 600
  601 VWSGKTLESW RALCTRCCWA SKGAAVGAGA GGSGPGGGGP GPGGGGGHGG GGGSLYSDVS 660
  661 TGLTWRSGTA SSVSYPKQMP LSQV