YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149045835, gi...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAESAPPPP PQPEALAAVK EERGEAAAGA GVPAEVAGRG AGGRRRKRPL QRGKPPYSYI  60
   61 ALIAMAIAHA PERRLTLGGI YKFITERFPF YRDNPKKWQN SIRHNLTLND CFLKIPREAG 120
  121 RPGKGNYWAL DPNAEDMFES GSFLRRRKRF KRSDLSTYPA YMHDAAAAAA AAAAAIFPGA 180
  181 VPAARPAYPG AVYAGYAPPL AAPPPVYYPA ASPGPCRVFG LVPERPLSPD LGPAPSAAGG 240
  241 SCAFAAAAGA PGTGSFQPAV CTGARPVNPA AYAAAYAGPD GAYPQGASSA LFAAAAGRLA 300
  301 GPTSPTAGGG SGGVEATVDF YGRTSPGQFG AALGPCYNPS GQLGAGGGGA YHSRHATAYP 360
  361 GAVDRFVSAM

Type	Start	End	Confidence
Cytoplasmic	1	54	0.65
Transmembrane Helix	55	70	0.28
Non-Cytoplasmic	71	370	0.64