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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GPV_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRSVLLSAV LSLVGAQPFP CPKTCKCVVR DAVQCSGGSV AHIAELGLPT NLTHILLFRM  60
   61 DRGVLQSHSF SGMTVLQRLM LSDSHISAID PGTFNDLVKL KTLRLTRNKI SHLPRAILDK 120
  121 MVLLEQLFLD HNALRDLDQN LFQKLLNLRD LCLNQNQLSF LPANLFSSLG KLKVLDLSRN 180
  181 NLTHLPQGLL GAQIKLEKLL LYSNRLMSLD SGLLANLGAL TELRLERNHL RSIAPGAFDS 240
  241 LGNLSTLTLS GNLLESLPPA LFLHVSWLTR LTLFENPLEE LPEVLFGEMA GLRELWLNGT 300
  301 HLRTLPAAAF RNLSGLQTLG LTRNPLLSAL PPGMFHGLTE LRVLAVHTNA LEELPEDALR 360
  361 GLGRLRQVSL RHNRLRALPR TLFRNLSSLV TVQLEHNQLK TLPGDVFAAL PQLTRVLLGH 420
  421 NPWLCDCGLW PFLQWLRHHL ELLGRDEPPQ CNGPESRASL TFWELLQGDQ WCPSSRGLPP 480
  481 DPPTENALKA PDPTQRPNSS QSWAWVQLVA RGESPDNRFY WNLYILLLIA QATIAGFIVF 540
  541 AMIKIGQLFR TLIREELLFE AMGKSSN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle