YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TR11B_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKWLCCALL VFLDIIEWTT QETFPPKYLH YDPETGRQLL CDKCAPGTYL KQHCTVRRKT  60
   61 LCVPCPDYSY TDSWHTSDEC VYCSPVCKEL QTVKQECNRT HNRVCECEEG RYLELEFCLK 120
  121 HRSCPPGLGV LQAGTPERNT VCKRCPDGFF SGETSSKAPC RKHTNCSSLG LLLIQKGNAT 180
  181 HDNVCSGNRE ATQNCGIDVT LCEEAFFRFA VPTKIIPNWL SVLVDSLPGT KVNAESVERI 240
  241 KRRHSSQEQT FQLLKLWKHQ NRDQEMVKKI IQDIDLCESS VQRHIGHANL TTEQLRILME 300
  301 SLPGKKISPD EIERTRKTCK PSEQLLKLLS LWRIKNGDQD TLKGLMYALK HLKAYHFPKT 360
  361 VTHSLRKTIR FLHSFTMYRL YQKLFLEMIG NQVQSVKISC L

Type	Start	End	Confidence
Signal Peptide	1	21	0.75
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	401	0.99