YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GALR2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGSGSQGAE NTSQEGGSGG WQPEAVLVPL FFALIFLVGT VGNALVLAVL LRGGQAVSTT  60
   61 NLFILNLGVA DLCFILCCVP FQATIYTLDD WVFGSLLCKA VHFLIFLTMH ASSFTLAAVS 120
  121 LDRYLAIRYP LHSRELRTPR NALAAIGLIW GLALLFSGPY LSYYRQSQLA NLTVCHPAWS 180
  181 APRRRAMDLC TFVFSYLLPV LVLSLTYART LRYLWRTVDP VTAGSGSQRA KRKVTRMIII 240
  241 VAVLFCLCWM PHHALILCVW FGRFPLTRAT YALRILSHLV SYANSCVNPI VYALVSKHFR 300
  301 KGFRKICAGL LRPAPRRASG RVSILAPGNH SGSMLEQEST DLTQVSEAAG PLVPPPALPN 360
  361 CTASSRTLDP AC

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.97
Transmembrane Helix	27	51	0.90
Cytoplasmic	52	61	0.90
Transmembrane Helix	62	85	0.92
Non-Cytoplasmic	86	99	0.91
Transmembrane Helix	100	121	0.90
Cytoplasmic	122	141	0.85
Transmembrane Helix	142	163	0.91
Non-Cytoplasmic	164	188	0.92
Transmembrane Helix	189	208	0.92
Cytoplasmic	209	236	0.90
Transmembrane Helix	237	256	0.95
Non-Cytoplasmic	257	274	0.84
Transmembrane Helix	275	295	0.87
Cytoplasmic	296	372	0.90