YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2143920, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WRAFENPHTS TLALVFYYVT GFFIAVSVIT NVVETVPCGQ VPGRQGTAVW REYSVVFFCL  60
   61 DTACVMIFTV EYLLRLFQHP AGYRFIRSVM SIIDVVAIMP YYIGLVMTNN EDVSGAFVTL 120
  121 RVFRVFRIFK FSRHSQGLRI LGYTLKSCAS ELGFLLFSLT MAIIIFATVM FYAEKSSSAS 180
  181 KFTSIPASFW YTIVTMTTLG YGDMVPKTIA GKIFGSICSL SGVLVIALPV PVIVSP

Type	Start	End	Confidence
Cytoplasmic	1	11	0.89
Transmembrane Helix	12	33	0.90
Non-Cytoplasmic	34	52	0.89
Transmembrane Helix	53	74	0.91
Cytoplasmic	75	84	0.82
Transmembrane Helix	85	105	0.91
Non-Cytoplasmic	106	112	0.84
Transmembrane Helix	113	131	0.58
Cytoplasmic	132	151	0.59
Transmembrane Helix	152	173	0.92
Non-Cytoplasmic	174	181	0.58
Transmembrane Helix	182	202	0.84
Cytoplasmic	203	212	0.50
Transmembrane Helix	213	233	0.94
Non-Cytoplasmic	234	236	0.54