YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62642842, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	54	0.62
Transmembrane Helix	55	75	0.89
Cytoplasmic	76	92	0.82
Transmembrane Helix	93	114	0.89
Non-Cytoplasmic	115	120	0.67
Transmembrane Helix	121	141	0.79
Cytoplasmic	142	149	0.60
Transmembrane Helix	150	166	0.89
Non-Cytoplasmic	167	197	0.72
Transmembrane Helix	198	218	0.83
Cytoplasmic	219	236	0.86
Transmembrane Helix	237	257	0.92
Non-Cytoplasmic	258	264	0.85
Transmembrane Helix	265	286	0.91
Cytoplasmic	287	301	0.84
Transmembrane Helix	302	320	0.95
Non-Cytoplasmic	321	339	0.92
Transmembrane Helix	340	360	0.94
Cytoplasmic	361	416	0.97
Transmembrane Helix	417	437	0.94
Non-Cytoplasmic	438	447	0.81
Transmembrane Helix	448	469	0.90
Cytoplasmic	470	483	0.85
Transmembrane Helix	484	503	0.92
Non-Cytoplasmic	504	518	0.83
Transmembrane Helix	519	541	0.88
Cytoplasmic	542	586	0.96
Transmembrane Helix	587	608	0.93
Non-Cytoplasmic	609	613	0.86
Transmembrane Helix	614	636	0.91
Cytoplasmic	637	760	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKYGGDPR PGPGGGLGPV DVPSARLTKY IVLLCLTKCL KAVGLFESYD LLKAVHIVQF  60
   61 IFILKLGTAF FMVLFQKPFS SGKTVTKHQW IKIFKHAVAG CIISLLWFFG LTLCGPLRTL 120
  121 LLFEHSDIVV ISLLSVLFTS SGGGPAKTRG AAFFIIAVIC LLLFDNDDLM AKMAEHPEGH 180
  181 HDSALTHMLY TAIAFLGVAD HKGGVLLLVL ALCCKVGFHT ASRKLSIDVG GAKRLQALSQ 240
  241 LVSVFLLCPW VIVLSVTTES KIESWFPLIM PFTTVIFFVM ILDFYMDSVC SVKMEASKCA 300
  301 RYGSFPIFIS ALLFGNFWTH PITDQLRAMN RAAHQESTEH VLSGGVVVSA VFFILSANIL 360
  361 SSPSKRGQKG TLIGYSPEGT PLYHFMGDAF QHSSQSVPRF IKDSLKQILE ESDSRQIFYF 420
  421 LCLNLLFTFV ELFYGVLTNS LGLISDGFHM LFDCSALVMG LFAALVSRWK ATRIFSYGYG 480
  481 RIEILSGFIN GLFLIVIAFF VFLESVARLI DPPELDTNML TPVSIGGLIV NLIGVCAFSH 540
  541 AHSHGHGPSQ GHCHSDHGHS HHAHGHSDHG HSHGFTGGGM NANMRGVFLH VLADTLGSIG 600
  601 VIVSTVLIEQ FGWFIADPLC SLFIAVLIFL SVIPLIKDAC QVLLLRLPPD YEKELHIALE 660
  661 KVQKLEGLIS YRDPHFWRHS ASIVAGTIHI QVTSDVLEQR VVQQVTGILK DAGVNNLTIQ 720
  721 VEKEAYFQHM SGLSTGFHDV LAMTQQMESM KYCKDGTYIM