YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109493909, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRFASLLLG AALLCAQGAF ARRVVSGQKV CFADVKHPCY KMAYFHELSS RVSFQEARLA  60
   61 CESEGGVLLS LENEAEQKLI ESMLQNLTKP GTGISDGDFW IGLLRSGDGQ TSGACPDLYQ 120
  121 WSDGSSSQFR NWYTDEPSCG SEKCVVMYHQ PTANPGLGGP YLYQWNDDRC NMKHNYICKY 180
  181 EPEIHPTEPV EKPYLTNQPE DTHENVVVTE AGIIPNLIYV IIPTIPLLLL ILVAFGTCCF 240
  241 QMLHKSKGRT KTSPNQSTLW ISKSTRKESG MEV

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	218	0.99
Transmembrane Helix	219	240	0.88
Cytoplasmic	241	273	0.91