YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TRAM1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIRKKSNKN PPVLSHEFVL QNHADIVSCL AMLFLLGLMF EITAKGAIIF VALQYNVTRP  60
   61 ATEEQAAESA SLYYYGIKDL ATVFFYMLVA IIVHAIIQEY VLDKINRRMH FSKTKHSKFN 120
  121 ESGQLSAFYL FACVWGTFIL VSENYISDPT ILWRAYPHNL MTFQMKFFYI SQLAYWLHAF 180
  181 PELYFQKTKK EDIPRQLVYI GLYLFHIAGA YLLNLNHLGL VLLVLHYFVE FLFHISRLFY 240
  241 FSDEKYQKGF SLWAVLFVLG RLLTLILSVL TVGFGLARAE NQKLDFSTGN FNVLAVRIAV 300
  301 LASICITQAF MMWKFINFQL RRWREHSAFQ APPVKRKPAV TKGRSSRKGT ENGVNGTVTS 360
  361 NGADSPRSRK EKSS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	43	0.83
Non-Cytoplasmic	44	81	0.90
Transmembrane Helix	82	102	0.95
Cytoplasmic	103	122	0.94
Transmembrane Helix	123	142	0.92
Non-Cytoplasmic	143	161	0.84
Transmembrane Helix	162	180	0.80
Cytoplasmic	181	195	0.74
Transmembrane Helix	196	215	0.85
Non-Cytoplasmic	216	221	0.63
Transmembrane Helix	222	241	0.88
Cytoplasmic	242	251	0.85
Transmembrane Helix	252	274	0.90
Non-Cytoplasmic	275	293	0.86
Transmembrane Helix	294	316	0.92
Cytoplasmic	317	374	0.96