YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APOH_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISPALIFFS AFLCHVAIAG RRMWPINTLK CTPRVCPFAG ILENGVVRYT TFEYPNTIGF  60
   61 ACNPGYYLNG TSSSKCTEEG KWSPELPVCA RITCPPPPIP KFAALKEYKT SVGNSSFYQD 120
  121 TVVFKCLPHF AMFGNDTVTC TAHGNWTQLP ECREVKCPFP SRPDNGFVNY PAKPVLSYKD 180
  181 KAVFGCHETY KLDGPEEVEC TKTGNWSALP SCKASCKLSV KKATVLYQGQ RVKIQDQFKN 240
  241 GMMHGDKVHF YCKNKEKKCS YTEEAQCIDG TIEIPKCFKE HSSLAFWKTD ASDVTPC

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	297	0.99