YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OX2R_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTKLEDSL PRRNWSSASE LNETQEPFLN PTDYDDEEFL RYLWREYLHP KEYEWVLIAG  60
   61 YIIVFVVALI GNVLVCVAVW KNHHMRTVTN YFIVNLSLAD VLVTITCLPA TLVVDITETW 120
  121 FFGQSLCKVI PYLQTVSVSV SVLTLSCIAL DRWYAICHPL MFKSTAKRAR NSIVVIWIVS 180
  181 CIIMIPQAIV MERSSMLPGL ANKTTLFTVC DERWGGEVYP KMYHICFFLV TYMAPLCLMV 240
  241 LAYLQIFRKL WCRQIPGTSS VVQRKWKQPQ PVSQPRGSGQ QSKARISAVA AEIKQIRARR 300
  301 KTARMLMVVL LVFAICYLPI SILNVLKRVF GMFTHTEDRE TVYAWFTFSH WLVYANSAAN 360
  361 PIIYNFLSGK FREEFKAAFS CCLGVHRRQG DRLARGRTST ESRKSLTTQI SNFDNVSKLS 420
  421 EHVALTSIST LPAANGAGPL QNWYLQQGVP SSLLSTWLEV

Type	Start	End	Confidence
Non-Cytoplasmic	1	56	0.95
Transmembrane Helix	57	80	0.92
Cytoplasmic	81	90	0.86
Transmembrane Helix	91	113	0.90
Non-Cytoplasmic	114	129	0.91
Transmembrane Helix	130	154	0.84
Cytoplasmic	155	170	0.92
Transmembrane Helix	171	190	0.94
Non-Cytoplasmic	191	223	0.95
Transmembrane Helix	224	246	0.92
Cytoplasmic	247	304	0.97
Transmembrane Helix	305	326	0.91
Non-Cytoplasmic	327	346	0.92
Transmembrane Helix	347	367	0.80
Cytoplasmic	368	460	0.86