YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OX1R_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPSATPGAQ PGVPTSSGEP FHLPPDYEDE FLRYLWRDYL YPKQYEWVLI AAYVAVFLIA  60
   61 LVGNTLVCLA VWRNHHMRTV TNYFIVNLSL ADVLVTAICL PASLLVDITE SWLFGHALCK 120
  121 VIPYLQAVSV SVAVLTLSFI ALDRWYAICH PLLFKSTARR ARGSILGIWA VSLAVMVPQA 180
  181 AVMECSSVLP ELANRTRLFS VCDERWADEL YPKIYHSCFF FVTYLAPLGL MGMAYFQIFR 240
  241 KLWGPQIPGT TSALVRNWKR PSEQLEAQHQ GLCTEPQPRA RAFLAEVKQM RARRKTAKML 300
  301 MVVLLVFALC YLPISVLNVL KRVFGMFRQA SDREAVYACF TFSHWLVYAN SAANPIIYNF 360
  361 LSGKFREQFK AAFSCCLPGL GPSSSARHKS LSLQSRCSVS KVSEHVVLTT VTTVLS

Type	Start	End	Confidence
Non-Cytoplasmic	1	48	0.98
Transmembrane Helix	49	72	0.92
Cytoplasmic	73	82	0.88
Transmembrane Helix	83	105	0.92
Non-Cytoplasmic	106	121	0.90
Transmembrane Helix	122	142	0.91
Cytoplasmic	143	162	0.84
Transmembrane Helix	163	182	0.94
Non-Cytoplasmic	183	215	0.95
Transmembrane Helix	216	239	0.87
Cytoplasmic	240	298	0.98
Transmembrane Helix	299	320	0.91
Non-Cytoplasmic	321	343	0.87
Transmembrane Helix	344	361	0.62
Cytoplasmic	362	416	0.64