YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AT5G1_RAT
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTTKALLIS PVLIRSCTRG LIRPVSASLL SRPEAPSKKP SCCSSPLQVA RREFQTSVIS  60
   61 RDIDTAAKFI GAGAATVGVA GSGAGIGTVF GSLIIGYARN PSLKQQLFSY AILGFALSEA 120
  121 MGLFCLMVAF LILFAM

Type	Start	End	Confidence
Cytoplasmic	1	68	0.79
Transmembrane Helix	69	95	0.82
Non-Cytoplasmic	96	110	0.69
Transmembrane Helix	111	134	0.93
Cytoplasmic	135	136	0.69