YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAG4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRNPRPGSA ASSHNHTPNF YSENSNSSHS ATSGDSNGRR SAGPELGEPD GRMARGSSCG  60
   61 EPALSSGVPG GDTWAGSSRP KLAPRSHNGQ TACGAATVRG GASEPSGSPA VLEEQLNLLP 120
  121 ILDLRQEMPP PPVSKSFLSL FFQVLSVFLS LVADGLVCVY REICSIRFLF TAVSLLSIFL 180
  181 AALWWGLLYL IPPLENEPKE MLTLSQYHHR VHSQGQQLQQ LQAELSKLHK EVTSVRAAHS 240
  241 ERVAKLVFQR LNEDFVRKPD YALSSVGASI DLEKTSSDYE DRNTAYFWNR LSFWNYARPP 300
  301 SVILEPDVFP GNCWAFEGEQ GQVVIRLPGH VQLSDITLQH PPPTVAHTGG ASSAPRDFAV 360
  361 FGLQADDDET EVFLGKFIFE VQKSEIQTFH LQNDPPSAFP KVKIQILSNW GHPRFTCLYR 420
  421 VRAHGVRISE SAEDNAMGVT GGPH

Type	Start	End	Confidence
Non-Cytoplasmic	1	138	0.86
Transmembrane Helix	139	160	0.88
Cytoplasmic	161	167	0.80
Transmembrane Helix	168	188	0.95
Non-Cytoplasmic	189	444	0.93