YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AQP4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDGAAARRW GKCGPPCSRE SIMVAFKGVW TQAFWKAVTA EFLAMLIFVL LSVGSTINWG  60
   61 GSENPLPVDM VLISLCFGLS IATMVQCFGH ISGGHINPAV TVAMVCTRKI SIAKSVFYIT 120
  121 AQCLGAIIGA GILYLVTPPS VVGGLGVTTV HGNLTAGHGL LVELIITFQL VFTIFASCDS 180
  181 KRTDVTGSVA LAIGFSVAIG HLFAINYTGA SMNPARSFGP AVIMGNWENH WIYWVGPIIG 240
  241 AVLAGALYEY VFCPDVELKR RLKEAFSKAA QQTKGSYMEV EDNRSQVETE DLILKPGVVH 300
  301 VIDIDRGDEK KGKDSSGEVL SSV

Type	Start	End	Confidence
Cytoplasmic	1	36	0.92
Transmembrane Helix	37	57	0.87
Non-Cytoplasmic	58	69	0.79
Transmembrane Helix	70	94	0.84
Cytoplasmic	95	114	0.88
Transmembrane Helix	115	136	0.93
Non-Cytoplasmic	137	153	0.91
Transmembrane Helix	154	176	0.90
Cytoplasmic	177	184	0.87
Transmembrane Helix	185	205	0.92
Non-Cytoplasmic	206	230	0.90
Transmembrane Helix	231	252	0.96
Cytoplasmic	253	323	0.99