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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GRIPE_RAT, RGPA1...
Protein type: Transmembrane
Type Confidence: 0.70
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHCGLLHIDQ DIVNTIIKHC SPQFFSLGLP GATMLIMDFI IAAGRVASSA FLNAPRVEAQ  60
   61 VLLGSLVCFP NLYCELPALH PSTPDIAVSQ FTDVKELIIK TVLSSARDEP SGPARCVALC 120
  121 SLGIWICEEL VHESHHPQIK EALNVICVSL KFTNKTVAHV ACNMLHMLVH YAPRLQTYQP 180
  181 DSPLKIIQIL IATITHLLPS TEASSYEMDK RLVVSLLLCL LDWIMALPLK TLLQSVHSTG 240
  241 AENEKTEKSV LNCIYKVLHG CVYGAQSFSH PKYFPISLSD LASVDYDPFM HLESLREPEP 300
  301 LHSPDSERSS KLQPVTEVKT QMQQGLISIA ARTVITHLVN HLGHYPMSGG PAMLTSQVCE 360
  361 NHDNHYSEST ELSPELFDSP NIQFFVLNNT TLVSCIQIRS EESVPGGGLA AGLVSANSNV 420
  421 RIIVRDLSGK YSWDSAILYG PPIVSGLPEP TSFILSMSYQ EKPEEPPTSN ECLEDITVKD 480
  481 GLSLQLRRFR ETVPTWSTIR EEEDVLDELL QYLRTTSPEC LQRTGISLNV PAPQPVCISE 540
  541 KQENDVINAI LKQYTEEKEF VEKHFNDLNM KASEQDEPTP QKPQSAFYYC RLLLSILGMN 600
  601 SWDKRRSFHL LKKNEKLLRE LRNLDSRQCR ETHKIAVFYV AEGQEDKYSI LTNIGGSQAY 660
  661 EDFVAGLGWE VNLTNHCGFM GGLQKNKSTG LTTPYFATST VEVIFHVSTR MPSESDDSLT 720
  721 KKINWRIALS FSIKDSVGIL MGIPLTL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle