YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24025621, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.95
Transmembrane Helix	39	65	0.72
Non-Cytoplasmic	66	112	0.91
Transmembrane Helix	113	134	0.82
Cytoplasmic	135	141	0.83
Transmembrane Helix	142	165	0.86
Non-Cytoplasmic	166	172	0.54
Transmembrane Helix	173	190	0.85
Cytoplasmic	191	201	0.82
Transmembrane Helix	202	224	0.93
Non-Cytoplasmic	225	231	0.79
Transmembrane Helix	232	252	0.96
Cytoplasmic	253	293	0.95
Transmembrane Helix	294	316	0.82
Non-Cytoplasmic	317	336	0.86
Transmembrane Helix	337	358	0.90
Cytoplasmic	359	369	0.77
Transmembrane Helix	370	389	0.90
Non-Cytoplasmic	390	394	0.77
Transmembrane Helix	395	419	0.83
Cytoplasmic	420	434	0.79
Transmembrane Helix	435	452	0.95
Non-Cytoplasmic	453	462	0.78
Transmembrane Helix	463	482	0.96
Cytoplasmic	483	498	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATMVELSPT SEQCEFVLGL PVNKKTPPRK VPSLCSMRYS IAFIAHICNF TLIAQNSIIS  60
   61 ITMVAMVNNT DQPSHLNSST EWFPDGLNGD QHEASKHLSI KAPVYNWSPQ TQGIIFSSVQ 120
  121 YGMMLMQGPG GYLAGKLGTK KVVGIALLGS SLLTLCIPLA ANLGLAFLLA TRAVQGLTQG 180
  181 AGYGGQFALW QKWAPPNERS RLCSIAMSGM ILGIFAVLLV GGIISEALGW PFVFYIFGSI 240
  241 GVVCCLLWLI LVYDDPVSHP WISSPEKEYI LSSLDQQFNS EEQPLPIKAM LKSLPLWSMC 300
  301 LCSMTHQWLV NTLIIYTPTY ISSVFKVNIR DNGLLSSLPF FVAWVIGILG GLLADFLLSK 360
  361 NFRLITVRKI ITILGNTPPA ALVVALPYVQ SSYIATTTFL TLSCGLSPLC QSGVYINALD 420
  421 IAPRYASLLM GTSRGLAHSS AVMVPIVAGF FLNQDSEFGW RNFFFVLFAI NLFGLIIYLV 480
  481 FAKADIQEWA RERKLTRL