YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23495936
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.95
Transmembrane Helix	39	65	0.73
Non-Cytoplasmic	66	112	0.92
Transmembrane Helix	113	134	0.84
Cytoplasmic	135	142	0.81
Transmembrane Helix	143	166	0.86
Non-Cytoplasmic	167	175	0.53
Transmembrane Helix	176	190	0.49
Cytoplasmic	191	201	0.45
Transmembrane Helix	202	223	0.94
Non-Cytoplasmic	224	307	0.58
Transmembrane Helix	308	329	0.90
Cytoplasmic	330	340	0.70
Transmembrane Helix	341	360	0.83
Non-Cytoplasmic	361	365	0.75
Transmembrane Helix	366	390	0.82
Cytoplasmic	391	405	0.79
Transmembrane Helix	406	423	0.95
Non-Cytoplasmic	424	433	0.77
Transmembrane Helix	434	453	0.96
Cytoplasmic	454	469	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATMVELSPT SEQCEFVLGL PVNKKTPPRK VPSLCSMRYS IAFIAHICNF TLIAQNSIIS  60
   61 ITMVAMVNNT DQPSHLNSST EWFPDGLNGD QHEASKHLSI KAPVYNWSPQ TQGIIFSSVQ 120
  121 YGMMLMQGPG GYLAGKLGTK KVVGIALLGS SLLTLCIPLA ANLGLAFLLA TRAVQGLTQG 180
  181 AGYGGQFALW QKWAPPNERS RLCSIAMSGS IGVVCCLLWL ILVYDDPVSH PWISSPEKEY 240
  241 ILSSLDQQFN SEEQPLPIKA MLKSLPLWSM CLCSMTHQWL VNTLIIYTPT YISSVFKVNI 300
  301 RDNGLLSSLP FFVAWVIGIL GGLLADFLLS KNFRLITVRK IITILGNTPP AALVVALPYV 360
  361 QSSYIATTTF LTLSCGLSPL CQSGVYINAL DIAPRYASLL MGTSRGLAHS SAVMVPIVAG 420
  421 FFLNQDSEFG WRNFFFVLFA INLFGLIIYL VFAKADIQEW ARERKLTRL