YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157821967, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.87
Transmembrane Helix	43	65	0.71
Non-Cytoplasmic	66	69	0.77
Transmembrane Helix	70	91	0.84
Cytoplasmic	92	104	0.84
Transmembrane Helix	105	123	0.93
Non-Cytoplasmic	124	137	0.80
Transmembrane Helix	138	159	0.92
Cytoplasmic	160	179	0.94
Transmembrane Helix	180	200	0.93
Non-Cytoplasmic	201	214	0.84
Transmembrane Helix	215	237	0.87
Cytoplasmic	238	316	0.98
Transmembrane Helix	317	339	0.80
Non-Cytoplasmic	340	365	0.86
Transmembrane Helix	366	387	0.84
Cytoplasmic	388	396	0.78
Transmembrane Helix	397	418	0.88
Non-Cytoplasmic	419	422	0.73
Transmembrane Helix	423	446	0.82
Cytoplasmic	447	475	0.90
Transmembrane Helix	476	498	0.81
Non-Cytoplasmic	499	504	0.69
Transmembrane Helix	505	526	0.94
Cytoplasmic	527	530	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSNGPTDT RAYQSLAEDC PFGSAEQPKR STGRLVMHSM AMFGREFCYA VEAAYVTPVL  60
   61 LSVGLPKSLY SMVWLLSPIL GFLLQPVVGS ASDHCRARWG RRRPYILTLG VMMLLGMALY 120
  121 LNGDAAVSAL VANPRQKLVW AISITMIGVV LFDFSADFID GPIKAYLFDV CSHQDKEKGL 180
  181 HYHALFTGFG GALGYLLGAI DWMHLELGKL LGTEFQVMFF FSALVLTLCF ITHLCSIPED 240
  241 PLRDDATDPP LQPDPQGSSL SADGMPRYGS IEKVKNGDAD TGLPVQGGKN KKPSGQSQRT 300
  301 MSMKSLLRAL VNMPSHYRCL CISHLIGWTA FLSNMLFFTD FMGQIVYHGD PYGAHNSTEF 360
  361 LIYERGVEVG CWGLCINSVF SSVYSYFQKV MVSYIGLKGL YFMGYLLFGL GTGFIGLFPN 420
  421 VYSTLVLCSM FGVMSSTLYT VPFNLIAEYH REEEKEKQQE VPGGPDNHGR GKGVDCAALT 480
  481 CMVQLAQILV GGGLGFLVNM AGSVVVVVIT ASAVALIGCC FVALFVRYVD