YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23193233, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.75
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.72
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	203	0.97
Transmembrane Helix	204	226	0.95
Cytoplasmic	227	237	0.88
Transmembrane Helix	238	258	0.96
Non-Cytoplasmic	259	291	0.92
Transmembrane Helix	292	314	0.86
Cytoplasmic	315	327	0.87
Transmembrane Helix	328	349	0.93
Non-Cytoplasmic	350	373	0.93
Transmembrane Helix	374	397	0.92
Cytoplasmic	398	416	0.95
Transmembrane Helix	417	440	0.90
Non-Cytoplasmic	441	479	0.94
Transmembrane Helix	480	499	0.94
Cytoplasmic	500	666	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSWIVFYL WLLTVFLGQI GGHSLFSCEP ITLRMCQDLP YNTTFMPNLL NHYDQQTAAL  60
   61 AMEPFHPMVN LDCSRDFRPF LCALYAPICM EYGRVTLPCR RLCQRAYSEC SKLMEMFGVP 120
  121 WPEDMECSRF PDCDEPYPRL VDLNLVGDPT EGAPVAVQRD YGFWCPRELK IDPDLGYSFL 180
  181 HVRDCSPPCP NMYFRREELS FARYFIGLIS IICLSATLVT FLTFLIDVTR FRYPERPIIF 240
  241 YAVCYMMVSL IFFIGFLLED RVACNASSPA QYKASTVTQG SHNKACTMLF MVLYFFTMAG 300
  301 SVWWVILTIT WFLAAVPKWG SEAIEKKALL FHASAWGIPG TLTIILLAMN KIEGDNISGV 360
  361 CFVGLYDVDA LRYFVLAPLC LYVVVGVSLL LAGIISLNRV RIEIPLEKEN QDKLVKFMIR 420
  421 IGVFSILYLV PLLVVIGCYF YEQAYRGIWE TTWIQERCRE YHIPCPYQVT QMSRPDLILF 480
  481 LMKYLMALIV GIPSIFWVGS KKTCFEWASF FHGRKKKETV NESRQVLQEP DFAQSLLRDP 540
  541 NTPIIRKSRG TSTQGTSTHA SSTQLAMVDD QRSKAGSVHS KVSSYHGSLH RSRDGRYTPC 600
  601 SYRGMEERLP HGSMSRLTDH SRHSSSHRLN EQSRHSSIRD LSNNPMTHIT HGTSMNRVIE 660
  661 EDGTSA