YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTH1R_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.99
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	187	0.99
Transmembrane Helix	188	212	0.91
Cytoplasmic	213	220	0.93
Transmembrane Helix	221	239	0.90
Non-Cytoplasmic	240	277	0.89
Transmembrane Helix	278	300	0.67
Cytoplasmic	301	319	0.68
Transmembrane Helix	320	342	0.91
Non-Cytoplasmic	343	361	0.91
Transmembrane Helix	362	385	0.91
Cytoplasmic	386	405	0.96
Transmembrane Helix	406	427	0.90
Non-Cytoplasmic	428	444	0.88
Transmembrane Helix	445	466	0.85
Cytoplasmic	467	591	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAARIAPSL ALLLCCPVLS SAYALVDADD VFTKEEQIFL LHRAQAQCDK LLKEVLHTAA  60
   61 NIMESDKGWT PASTSGKPRK EKASGKFYPE SKENKDVPTG SRRRGRPCLP EWDNIVCWPL 120
  121 GAPGEVVAVP CPDYIYDFNH KGHAYRRCDR NGSWEVVPGH NRTWANYSEC LKFMTNETRE 180
  181 REVFDRLGMI YTVGYSMSLA SLTVAVLILA YFRRLHCTRN YIHMHMFLSF MLRAASIFVK 240
  241 DAVLYSGFTL DEAERLTEEE LHIIAQVPPP PAAAAVGYAG CRVAVTFFLY FLATNYYWIL 300
  301 VEGLYLHSLI FMAFFSEKKY LWGFTIFGWG LPAVFVAVWV GVRATLANTG CWDLSSGHKK 360
  361 WIIQVPILAS VVLNFILFIN IIRVLATKLR ETNAGRCDTR QQYRKLLRST LVLVPLFGVH 420
  421 YTVFMALPYT EVSGTLWQIQ MHYEMLFNSF QGFFVAIIYC FCNGEVQAEI RKSWSRWTLA 480
  481 LDFKRKARSG SSSYSYGPMV SHTSVTNVGP RAGLSLPLSP RLPPATTNGH SQLPGHAKPG 540
  541 APATETETLP VTMAVPKDDG FLNGSCSGLD EEASGSARPP PLLQEEWETV M