YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GTR4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.97
Transmembrane Helix	20	40	0.92
Non-Cytoplasmic	41	79	0.94
Transmembrane Helix	80	102	0.92
Cytoplasmic	103	111	0.86
Transmembrane Helix	112	133	0.92
Non-Cytoplasmic	134	138	0.79
Transmembrane Helix	139	161	0.89
Cytoplasmic	162	171	0.80
Transmembrane Helix	172	192	0.92
Non-Cytoplasmic	193	198	0.87
Transmembrane Helix	199	220	0.91
Cytoplasmic	221	287	0.96
Transmembrane Helix	288	309	0.88
Non-Cytoplasmic	310	322	0.86
Transmembrane Helix	323	344	0.93
Cytoplasmic	345	351	0.92
Transmembrane Helix	352	374	0.93
Non-Cytoplasmic	375	382	0.85
Transmembrane Helix	383	407	0.88
Cytoplasmic	408	417	0.89
Transmembrane Helix	418	438	0.92
Non-Cytoplasmic	439	446	0.68
Transmembrane Helix	447	466	0.95
Cytoplasmic	467	509	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSGFQQIGS EDGEPPQQRV TGTLVLAVFS AVLGSLQFGY NIGVINAPQK VIEQSYNATW  60
   61 LGRQGPGGPD SIPQGTLTTL WALSVAIFSV GGMISSFLIG IISQWLGRKR AMLANNVLAV 120
  121 LGGALMGLAN AAASYEILIL GRFLIGAYSG LTSGLVPMYV GEIAPTHLRG ALGTLNQLAI 180
  181 VIGILVAQVL GLESMLGTAT LWPLLLAITV LPALLQLLLL PFCPESPRYL YIIRNLEGPA 240
  241 RKSLKRLTGW ADVSDALAEL KDEKRKLERE RPLSLLQLLG SRTHRQPLII AVVLQLSQQL 300
  301 SGINAVFYYS TSIFELAGVE QPAYATIGAG VVNTVFTLVS VLLVERAGRR TLHLLGLAGM 360
  361 CGCAILMTVA LLLLERVPSM SYVSIVAIFG FVAFFEIGPG PIPWFIVAEL FSQGPRPAAM 420
  421 AVAGFSNWTC NFIVGMGFQY VADAMGPYVF LLFAVLLLGF FIFTFLRVPE TRGRTFDQIS 480
  481 ATFRRTPSLL EQEVKPSTEL EYLGPDEND