YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149048935
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMIAAFYSN KSILITGATG FLGKVLMEKL FRTSPHLKVI YILVRPKSGQ TLQERVFQIL  60
   61 NSKLFERVKE VCPNVHEKIR PISADLNQRD FAISKEDMQE LLSCTNIVFH CAATVRFDAH 120
  121 LREAVQLNVT ATQQLLLMAS EMPKLEAFIH ISTAFSNCNL SHIDEVIYPC PVEPRKIIDS 180
  181 MEWLDDSIIE EITPKLIGDR PNTYTYTKAL GEVVVQQESG NLNVAIVRPS IVGATWQEPF 240
  241 PGWVDNLNGP SGLIIATGKG FLRSIKATPM AVADLIPVDT VVNLTIAVGW YTAVHRPKST 300
  301 LIYHSTSGNL NPCNWYEMGL QVLATVEKIP FESAFRRPNA DFTTNNFTTQ YWNTVSHWAP 360
  361 AIIYDFYLRL TGRKPRMLKL MNRLLKTISM LEYFINHSWE WSTNNTEMLL SELSPEDQRV 420
  421 FNFDVRQLNW LEYIENYVLG VKKYLLKEDL AGIPKAKQHL KRLRNIHYLF NTALFLIIWR 480
  481 LLIARSQMAR NIWFFIVSFC YKFISYFRAS STLKV

Type	Start	End	Confidence
Non-Cytoplasmic	1	353	0.69
Transmembrane Helix	354	368	0.34
Cytoplasmic	369	464	0.57
Transmembrane Helix	465	484	0.88
Non-Cytoplasmic	485	490	0.50
Transmembrane Helix	491	509	0.72
Cytoplasmic	510	515	0.57