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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: DMBT1_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.73
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGISIVIFEI CLLWGQILST ASQSRSSTPD WWNHGGTIND VIYDTQETPE VTTTQVPDST  60
   61 SIGTDSGLAV RLVNGGDRCR GRVEILYQGS WGTMCDDGTD SGLAVRLVNG GDRCRGRVEI 120
  121 LYQGSWGTMC DDSWDINDAN VVCRQLGCGW ALSAPGSAQF GQGLGPIVLD DVACRGHEAY 180
  181 LWSCSHRGWL SHNCGHQEDA GVICSDSQTS SPTPGWWNPG GTNNDVIYDT QETTETSQTS 240
  241 SPTPDWWNHG GTINDVIYDT QETTEGTDSG LAVRLVNGGD RCRGRVEILY QGSWGTVCDD 300
  301 SWDINDANVV CRQLGCGWAL SAPGSAQFGQ GSGSIVLDDV ACRGHEAYLW SCSHRGWLSH 360
  361 NCGHQEDAGV ICSYSQTSSP TPDSQTSSPT PGWWNPGGTN NDVSYGPEQT TDATDSGLAV 420
  421 RLVNGGDRCQ GRVEILYQGS WGTVCDDSWD TKDANVVCRQ LVCGWALSAP GSAHFGQGSG 480
  481 SIVLDDVACT GHEAYLWSCS HRGWLSHNCG HHEDAGVICS DAQTQSTTWP DMWPTTTPET 540
  541 TTDWWTTKYS SSVPTTQFPT IADWWTTPSP EYTCGGLLTL PYGQFSSPYY PGSYPNNARC 600
  601 LWKIFVSSMN RVTVVFTDVQ LEGGCNYDYI LVFDGPENNS SLIARVCDGF NGSFTSTQNF 660
  661 MSVVFITDGS VTRRGFQADY YSTPISTSTT SPTTFPIVTD WWTTPSPEYT CGGLLTLPYG 720
  721 QFSSPYYPGS YPNNARCLWK IFVPSMNRVT VVFTDVQLEG GCNYDYILGF DGPEYNSSLI 780
  781 ARVCDGSNGS FTSTQNFMSV VFITDGSVTR RGFQADYYST PIRTSTTPPT TFPIITGNDS 840
  841 SLVLRLVNGT NRCEGRVEIL YRGSWVPCAD DSWDINDANV VCRQLGCGSA LSAPGNAWFG 900
  901 QGSGLIVLDD VSCSGYESHL WNCRHPGWLV HNCRHVEDAG VICSLPDPTP SPGPVWTSPP 960
  961 FVNYTCGGFL TGLSGQFSSP YYPGSYPNNA RCLWNIEVPN NYRVTVVFRD VQLEGGCNYD1020
 1021 YIEIFDGPHH SSPLIARVCD GAMGSFTSTS NFMSVRFTTD HSVTRRGFRA DYYSDFDNNT1080
 1081 TNLLCLSNHM RASVSRSYLQ SMGYSSRDLV IPGWNVSYQC QPQITQREVI FTIPYTGCGT1140
 1141 TKQADNETIN YSNFLKAAVS NGIIKRRKDL HIHVSCKMLQ NTWVNTMYIT NNTVEIQEVQ1200
 1201 YGNFDVNISF YTSSSFLYPV TSSPYYVDLD QNLYLQAEVL HSDTSLALFV DTCVASPHPN1260
 1261 DFSSLTYDLI RSGCIRDETY QSYSSPSPRI TRFKFSSFHF LNRFPSVYLQ CKLVVCRAND1320
 1321 VSSRCYRGCV VRSKRDVGSY QEKVDVVLGP IQLQSPSKEK RSLDLAVADV EKPASSQEVY1380
 1381 PTAAIFGGVF LALVVAVAAF TLGRKTRTAR GQPPSTKM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle