YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AQP9_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSEKDGAKK SLMQRLALKS RIAKETLSEF LGTFIMIVLG CSSIAQAVLS RERFGGIITI  60
   61 NIGFASAVVM ALYVTFGISG GHINPAVSFA MCAFGRMEWF KFPFYVGAQF LGAFVGAATV 120
  121 FGIYYDGLMA FAGGKLLVVG ENATAFIFAT YPAPFISTPG AFVDQVVSTM FLLLIVFAMF 180
  181 DSRNLGVPRG LEPVVIGLLI IVLSCSLGLN SGCAMNPARD LSPRLFTALA GWGFEVFTVG 240
  241 NNFWWIPVVG PMIGAFLGGL IYILFIQMHH SKLDPDMKAE PSENNLEKHE LSVIM

Type	Start	End	Confidence
Cytoplasmic	1	29	0.77
Transmembrane Helix	30	49	0.92
Non-Cytoplasmic	50	56	0.70
Transmembrane Helix	57	83	0.79
Cytoplasmic	84	101	0.63
Transmembrane Helix	102	124	0.90
Non-Cytoplasmic	125	160	0.49
Transmembrane Helix	161	180	0.92
Cytoplasmic	181	193	0.51
Transmembrane Helix	194	214	0.91
Non-Cytoplasmic	215	242	0.64
Transmembrane Helix	243	266	0.89
Cytoplasmic	267	295	0.95