YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157820319, gi...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.78
Transmembrane Helix	38	57	0.83
Non-Cytoplasmic	58	74	0.71
Transmembrane Helix	75	97	0.63
Cytoplasmic	98	111	0.60
Transmembrane Helix	112	134	0.75
Non-Cytoplasmic	135	138	0.51
Transmembrane Helix	139	159	0.64
Cytoplasmic	160	164	0.67
Transmembrane Helix	165	184	0.93
Non-Cytoplasmic	185	191	0.78
Transmembrane Helix	192	214	0.92
Cytoplasmic	215	231	0.78
Transmembrane Helix	232	255	0.86
Non-Cytoplasmic	256	262	0.73
Transmembrane Helix	263	285	0.91
Cytoplasmic	286	297	0.70
Transmembrane Helix	298	313	0.38
Non-Cytoplasmic	314	319	0.44
Transmembrane Helix	320	339	0.72
Cytoplasmic	340	363	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRVPLKRSR ILRMALTGAS AVSEEADSEN KPFLLRALQI ALVVSLYWVT SISMVFLNKY  60
   61 LLDSPSLQLD TPIFVTFYQC LVTSLLCKGL STLATCCPGM VDFPTLNLDL KVARSVLPLS 120
  121 VVFIGMITFN NLCLKYVGVA FYNVGRSLTT VFNVLLSYLL LKQTTSFYAL LTCAIIIGGF 180
  181 WLGIDQEGAE GTLSLTGTIF GVLASLCVSL NAIYTKKVLP AVDHSIWRLT FYNNVNACVL 240
  241 FLPLMVVLGE LHALLAFAHL NSAHFWVMMT LGGLFGFAIG YVTGLQIKFT SPLTHNVSGT 300
  301 AKACAQTVLA VLYYEEIKSF LWWTSNLMVL GGSSAYTWVR GWEMQKTQED PSSKEGEKSA 360
  361 IGV