YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLRN1_RAT
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSQQKKIIF CMAGVFSFAC ALGVVTALGT PLWIKATVLC KTGALLVNAS GQELDKFMGE  60
   61 MQYGLFHGEG VRQCGLGARP FRFSFFPDLL KAIPVSIHVN IILFSMILVV LTMVGTAFFM 120
  121 YNAFGKPFES LHGPLGLYLV SFISGSCGCL VMILFASEVK IHRLSEKIAN FKEGTYAYKT 180
  181 QNENYTTSFW VVFICFFVHF LNGLLIRLAG FQFPFTKSKE TETTNVASDL MY

Type	Start	End	Confidence
Cytoplasmic	1	7	0.81
Transmembrane Helix	8	29	0.88
Non-Cytoplasmic	30	96	0.68
Transmembrane Helix	97	124	0.80
Cytoplasmic	125	134	0.56
Transmembrane Helix	135	156	0.94
Non-Cytoplasmic	157	186	0.61
Transmembrane Helix	187	211	0.83
Cytoplasmic	212	232	0.63