YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	THIC_RAT
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAGSDPVVI ISAARTAIGS FNGALSTVPV HNLGTTVIKE VLQRAKVAPE EVSEVIFGHV  60
   61 LTAGCGQNPT RQASVGAGIP YSVPAWSCQM ICGSGLKAVC LAAQSIAMGD STIVVAGGME 120
  121 NMSKAPHLAH LRSGVKMGEV PLADSILCDG LTDAFHNYHM GITAENVAKK WQVSREAQDK 180
  181 VAVVSQNRAE HAQKAGHFDK EIVPVHVSSR KGLTEVKIDE FPRHGSNLEA MSKLKPYFLT 240
  241 DGTGTVTPAN ASGMNDGAAA VVLMKKTEAE SRMLKPLAQV VSWSQAGVEP SVMGVGPIPA 300
  301 IKQAVAKAGW SLEDVDVFEI NEAFAAVSAA IAKELGLSPE KVNIDGGAIA LGHPLGASGC 360
  361 RILVTLLHTL ERVGGTRGVA ALCIGGGMGI AMCVQRG

Type	Start	End	Confidence
Non-Cytoplasmic	1	372	0.82
Transmembrane Helix	373	394	0.61
Cytoplasmic	395	397	0.35