YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCAM1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDFDSNPFA DPDLNNPFKD PSVTQVTRNV PPGLDEYNPF SDSRTPPPGG VKMPNVPNTQ  60
   61 PAIMKPTEEH PAYTQITKEH ALAQAELLKR QEELERKAAE LDRREREMQN LSQHGRKNNW 120
  121 PPLPSNFPVG PCFYQDFSVD IPVEFQKTVK LMYYLWMFHA VTLFLNIFGC LAWFCVDSSR 180
  181 AVDFGLSILW FLLFTPCSFV CWYRPLYGAF RSDSSFRFFV FFFVYICQFA VHVLQAAGFH 240
  241 NWGNCGWISS LTGLNKNIPV GIMMIIIAAL FTASAVISLV MFKKVHGLYR TTGASFEKAQ 300
  301 QEFATGVMSN KTVQTAAANA ASTAATSAAQ NAFKGNQM

Type	Start	End	Confidence
Cytoplasmic	1	154	0.99
Transmembrane Helix	155	176	0.95
Non-Cytoplasmic	177	183	0.89
Transmembrane Helix	184	206	0.88
Cytoplasmic	207	217	0.84
Transmembrane Helix	218	239	0.91
Non-Cytoplasmic	240	259	0.92
Transmembrane Helix	260	282	0.93
Cytoplasmic	283	338	0.98