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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25281969
Protein type: Transmembrane
Type Confidence: 0.86
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRLLEPCWW ILFLKITSSV LHYVVCFPAL TEGYVGTLQE SRQGSSVQIR RRKASGDPYW  60
   61 AYSGAYGPEH WVTSSVSCGG SHQSPIDILD HHARVGEEYQ ELQLDGFDNE SSNKTWMKNT 120
  121 GKTVAILLKD DYFVSGAGLP GRFKAEKVEF HWGHSNGSAG SEHSVNGRRF PVEMQIFFYN 180
  181 PDDFDSFQTA ISENRIIGAM AIFFQVSPRD NSALDPIIHG LKGVVHHEKE TFLDPFVLRD 240
  241 LLPASLGSYY RYTGSLTTPP CSEIVEWIVF RRPVPISYHQ LEAFYSIFTT EQQDHVKSVE 300
  301 YLRNNFRPQQ ALNDRVVSKS AVRDAWNHDL ADFLDNPLGT EASKVCSSPP IHMKVQPLNQ 360
  361 TALQVSWSQP ETIYHPPIMN YMISYSWTKN EDEKEKTFTK DSDKDLKATI SHISPDSLYL 420
  421 FRVQAVCRND MRSDFSQTML FQANTTRIFQ GTRIVKTGVP TASPASSADM APISSGSSTW 480
  481 TSSGIPFSFV SMATGMGPSS SGSQATVASV VTSTLLAGLG FGGGGISSFP STVWPTRLPT 540
  541 ASAASKQAGR PVLATTEALA SPGPDGDSAP TKDGEGAEEG EKEEKSESED GEREQEEEEK 600
  601 DSEKKEKSEA THTAAESDQT APAPTPSSPH RTAQEGGHQT IPGHRQDHSA PVTDQPGHVD 660
  661 PGLDTLVDTA TQVPPTATEE HYSGSDPKRP EMPSKKPISR GDRFSEDSKF ITVNPAEKNT 720
  721 SGMISRPSPG RMEWIIPLIV VSALTFVCLV LLIAVLVYWR KCFQTAHFYV EDSSSPRVVP 780
  781 NESIPIIPIP DDMEAIPVKQ FGKSQHGFSG DFEEVQRCTA DMNITAEHSN HPDNKHKNRY 840
  841 INILAYDHSR VKLRPLPGKD SKHSDYINAN YVDGYNKAKA YIATQGPLKS TFEDFWRMIW 900
  901 EQNTGIIIMI TNLVEKGRRK CDQYWPTENT EEYGNIIVTL KSTEVHACYT VRRFSVRNTK 960
  961 VKKGQKGNPK GRQNERTVIQ YHYTQWPDMG VPEYALPVLT FVRRSSAARM PDMGPVLVHC1020
 1021 SAGVGRTGTY IVIDSMLQQI KDKSTVNVLG FLKHIRTQRN YLVQTEEQYI FIHDALLEAI1080
 1081 LGKETEVSSS QLHSYVNSIL IPGVGGKTRL EKQFKLITQC NAKYVECFSA QKECNKEKNR1140
 1141 NSSVVPAERA RVGLAPLPGM KGTDYINASY IMGYYRSNEF IITQHPLPHT TKDFWRMIWD1200
 1201 HNAQIIVMLP DNQSLAEDEF VYWPSREESM NCEAFTVTLI SKDRLCLSNE EQIIIHDFIL1260
 1261 EATQDDYVLE VRHFQAPISS TFELINVIKE EALARDGPTI VHDEYGAVSA GMLCALTTLS1320
 1321 QQLENENAVD VFQVAKMINL MRPGVFTDIE QYQFVYKAML SLVSTKENGN GPMTGDKNGA1380
 1381 VLTAEESDPA ESMESLV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle