YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NRX1B_RAT
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYQRMLRCGA ELGSPGGGSS GGAGGRLALL WIVPLTLSGL LGVAWGASSL GAHHIHHFHG  60
   61 SSKHHSVPIA IYRSPASLRG GHAGTTYIFS KGGGQITYKW PPNDRPSTRA DRLAIGFSTV 120
  121 QKEAVLVRVD SSSGLGDYLE LHIHQGKIGV KFNVGTDDIA IEESNAIIND GKYHVVRFTR 180
  181 SGGNATLQVD SWPVIERYPA GNNDNERLAI ARQRIPYRLG RVVDEWLLDK GRQLTIFNSQ 240
  241 ATIIIGGKEQ GQPFQGQLSG LYYNGLKVLN MAAENDANIA IVGNVRLVGE VPSSMTTEST 300
  301 ATAMQSEMST SIMETTTTLA TSTARRGKPP TKEPISQTTD DILVASAECP SDDEDIDPCE 360
  361 PSSGGLANPT RVGGREPYPG SAEVIRESSS TTGMVVGIVA AAALCILILL YAMYKYRNRD 420
  421 EGSYHVDESR NYISNSAQSN GAVVKEKQPS SAKSANKNKK NKDKEYYV

Type	Start	End	Confidence
Cytoplasmic	1	26	0.76
Transmembrane Helix	27	48	0.77
Non-Cytoplasmic	49	392	0.90
Transmembrane Helix	393	414	0.92
Cytoplasmic	415	468	0.91