YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GP183_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANNFTTPLA ASHGNNCDLY AHHSTARILM PLHYSLVFII GLVGNLLALV VIVQNRKKIN  60
   61 STTLYSMNLV ISDILFTTAL PTRIVYYALG FDWRIGDALC RITALLFYIN TYAGVNFMTC 120
  121 LSIDRFFAVV HPLRYNKIKR IEYAKGICVF VWILVFAQTL PLLLKPMSKQ EADKTTCMEY 180
  181 PNFEGTASLP WILLGACLLG YVLPLAIILL CYSQICCKLF RTAKQNPLTE KSGVNKKALN 240
  241 TIILIIGVFV LCFTPYHVAI MQHMVKTLYA PGALGCGVRH SFQISLHFTV CLMNFNCCMD 300
  301 PFIYFFACKG YKRKVMKMLK RQVSVSISSA VRSAPEENSR EMTESQMMIH SKASNGR

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.93
Transmembrane Helix	32	53	0.94
Cytoplasmic	54	63	0.86
Transmembrane Helix	64	85	0.86
Non-Cytoplasmic	86	103	0.77
Transmembrane Helix	104	123	0.84
Cytoplasmic	124	142	0.80
Transmembrane Helix	143	162	0.92
Non-Cytoplasmic	163	190	0.93
Transmembrane Helix	191	212	0.94
Cytoplasmic	213	237	0.88
Transmembrane Helix	238	260	0.91
Non-Cytoplasmic	261	283	0.95
Transmembrane Helix	284	308	0.86
Cytoplasmic	309	357	0.97