YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLPP1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDKPRLPYV VLDVICVLLA GLPFIILTSR HTPFQRGVFC TDESIKYPYR EDTIPYALLG  60
   61 GIVIPFCIIV MITGETLSVY FNVLHSNSFV SNHYIATIYK AVGAFLFGAS ASQSLTDIAK 120
  121 YSIGRLRPHF LAVCNPDWSK INCSDGYIEN FVCQGNEQKV REGRLSFYSG HSSFSMYCML 180
  181 FVALYLQARM KGDWARLLRP MLQFGLVALS IYVGLSRVSD YKHHWSDVLI GLIQGAVVAI 240
  241 LVVLYVTDFF KTTESNKERK EDSHTTLHET TNRQSYARNH EP

Type	Start	End	Confidence
Cytoplasmic	1	8	0.65
Transmembrane Helix	9	29	0.92
Non-Cytoplasmic	30	55	0.67
Transmembrane Helix	56	81	0.81
Cytoplasmic	82	95	0.51
Transmembrane Helix	96	115	0.74
Non-Cytoplasmic	116	166	0.65
Transmembrane Helix	167	188	0.81
Cytoplasmic	189	196	0.68
Transmembrane Helix	197	216	0.88
Non-Cytoplasmic	217	227	0.61
Transmembrane Helix	228	250	0.88
Cytoplasmic	251	282	0.77