YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCR5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFQGSIPTY IYDIDYSMSA PCQKVNVKQI AAQLLPPLYS LVFIFGFVGN MMVFLILISC  60
   61 KKLKSMTDIY LFNLAISDLL FLLTLPFWAH YAANEWVFGN IMCKLFTGIY HIGYFGGIFF 120
  121 IILLTIDRYL AIVHAVFAIK ARTVNFGVIT SVVTWVVAVF VSLPEIIFMR SQKEGSHYTC 180
  181 SPHFLHIQYR FWKHFQTLKM VILSLILPLL VMVICYSGIL NTLFRCRNEK KRHRAVRLIF 240
  241 AIMIVYFLFW TPYNIVLLLT TFQEYFGLNN CSSSNRLDQA MQVTETLGMT HCCLNPVIYA 300
  301 FVGEKFRNYL SVFFRKHIVK RFCKHCSIFQ QVNPDRVSSV YTRSTGEQEV STGL

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.97
Transmembrane Helix	39	60	0.91
Cytoplasmic	61	68	0.95
Transmembrane Helix	69	90	0.94
Non-Cytoplasmic	91	108	0.87
Transmembrane Helix	109	131	0.86
Cytoplasmic	132	142	0.87
Transmembrane Helix	143	163	0.90
Non-Cytoplasmic	164	200	0.89
Transmembrane Helix	201	224	0.88
Cytoplasmic	225	235	0.92
Transmembrane Helix	236	257	0.88
Non-Cytoplasmic	258	354	0.82