YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IVD_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAVRLLGR RVSSWRLRPL PSPLAVPQRA HSMLPVDDDI NGLNEEQKQL RHTISKFVQE  60
   61 NLAPKAQEID QSNDFKNLRE FWKQLGSLGV LGITAPVQYG GSGLGYLEHV LVMEEISRAS 120
  121 AAVGLSYGAH SNLCINQIVR NGNEAQKEKY LPKLISGEFI GALAMSEPNA GSDVVSMRLK 180
  181 AEKKGDHYVL NGNKFWITNG PDADVLVVYA KTDLTAVPAS RGITAFIVEK DMPGFSTSKK 240
  241 LDKLGMRGSN TCELVFEDCK VPAANILSQE SKGVYVLMSG LDLERLVLAG GPLGIMQAVL 300
  301 DHTIPYLHVR EAFGQKIGQF QLMQGKMADM YTRLMACRQY VYNVARACDE GHITAKDCAG 360
  361 VILYTAECAT QVALDGIQCL GGNGYINDFP MGRFLRDAKL YEIGGGTSEV RRLVIGRAFN 420
  421 ADFR

Type	Start	End	Confidence
Signal Peptide	1	32	0.59
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	424	0.99