YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34877391, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSFYVDSL IIKDSSRPAP SLPESHPGPD FFIPLGMPSP LVMSVSGPGC PSRKSGAFCV  60
   61 CPLCVTSHLH SSRPPAGAGG GATGTAGAAV AGGGVAGGTG ALPLLKSQFS PGPGDAQFCP 120
  121 RVSHAHHHHH APQHHHHHHQ PQQPGSAAAA AAAAAAAAAA AAALGHPQHH APVCAATTYN 180
  181 VSDPRRFHCL TMGGSDTSQV PNGKRMRTAF TSTQLLELER EFSSNMYLSR LRRIEIATYL 240
  241 NLSEKQVKIW FQNRRVKHKK EGKGASRNNH ASCKCVGSQA HYARSEDEDS LSPASANEDK 300
  301 EISPL

Type	Start	End	Confidence
Cytoplasmic	1	78	0.80
Transmembrane Helix	79	102	0.79
Non-Cytoplasmic	103	145	0.88
Transmembrane Helix	146	166	0.65
Cytoplasmic	167	305	0.67