YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57908, gi\|149...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAALLLALA FTFLSGQGAC AAAGTIVTSV QEVDSKTQLT CFLNSSGIDI VGHRWMRGGK  60
   61 VLQEDTLPDL QMKYTVDADD RSGEYSCIFL PEPVGRGNIN VEGPPRIKVG KKSEHASEGE 120
  121 FVKLICKSEA SHPPVDEWVW FKTSDTGDQT ISNGTEANSK YVIISTPELS ELIISDLDMN 180
  181 VDPGTYVCNA TNSQGSARET ISLRVRSRLA ALWPFLGIVA EVLVLVTIIF IYEKRRKPDQ 240
  241 TLDEDDPGAA PLKGSGSHLN DKDKNVRQRN AT

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	209	0.99
Transmembrane Helix	210	232	0.93
Cytoplasmic	233	272	0.99