YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NPT2A_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	105	0.76
Transmembrane Helix	106	128	0.79
Non-Cytoplasmic	129	140	0.62
Transmembrane Helix	141	162	0.80
Cytoplasmic	163	168	0.43
Transmembrane Helix	169	203	0.56
Non-Cytoplasmic	204	224	0.47
Transmembrane Helix	225	252	0.55
Cytoplasmic	253	345	0.56
Transmembrane Helix	346	368	0.93
Non-Cytoplasmic	369	396	0.55
Transmembrane Helix	397	430	0.74
Cytoplasmic	431	438	0.67
Transmembrane Helix	439	460	0.84
Non-Cytoplasmic	461	468	0.85
Transmembrane Helix	469	490	0.92
Cytoplasmic	491	510	0.91
Transmembrane Helix	511	531	0.94
Non-Cytoplasmic	532	537	0.72
Transmembrane Helix	538	559	0.91
Cytoplasmic	560	637	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSYSERLGG PAVSPLPVRG RHMVHGAAFA YVPSPQVLHR IPGTTTYAIS SLSPVALTEH  60
   61 SCPYGEVLEC HDPLPAKLAQ EEEQKPEPRL SQKLAQVGTK LLKVPLMLGF LYLFVCSLDV 120
  121 LSSAFQLAGG KVAGDIFKDN AILSNPVAGL VVGILVTVLV QSSSTSTSII VSMVSSGLLE 180
  181 VSSAIPIIMG SNIGTSVTNT IVALMQAGDR TDFRRAFAGA TVHDCFNWLS VLVLLPLEAA 240
  241 TGYLHHVTGL VVASFNIRGG RDAPDLLKVI TEPFTKLIIQ LDKSVITSIA VGDESLRNHS 300
  301 LIRIWCQPET KEASTSMSRV EAIGSLANTT MEKCNHIFVD TGLPDLAVGL ILLAGSLVVL 360
  361 CTCLILLVKM LNSLLKGQVA NVIQKVINTD FPAPFTWVTG YFAMVVGASM TFVVQSSSVF 420
  421 TSAITPLIGL GVISIERAYP LTLGSNIGTT TTAILAALAS PREKLSSSFQ IALCHFFFNI 480
  481 SGILLWYPLP CTRLPIRMAK ALGKRTAKYR WFAVLYLLVC FLLLPSLVFG ISMAGWQAMV 540
  541 GVGTPFGALL AFVVLVNVLQ SRSPGHLPKW LQTWDFLPRW MHSLQPLDGL ITRATLCYAR 600
  601 PEPRSPQLPP RVFLEELPPA TPSPRLALPA HHNATRL