YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NTCP_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.91
Transmembrane Helix	26	46	0.92
Cytoplasmic	47	59	0.85
Transmembrane Helix	60	80	0.93
Non-Cytoplasmic	81	89	0.69
Transmembrane Helix	90	110	0.93
Cytoplasmic	111	117	0.87
Transmembrane Helix	118	140	0.91
Non-Cytoplasmic	141	155	0.89
Transmembrane Helix	156	176	0.93
Cytoplasmic	177	185	0.88
Transmembrane Helix	186	208	0.87
Non-Cytoplasmic	209	221	0.72
Transmembrane Helix	222	244	0.86
Cytoplasmic	245	257	0.80
Transmembrane Helix	258	279	0.77
Non-Cytoplasmic	280	284	0.62
Transmembrane Helix	285	304	0.89
Cytoplasmic	305	362	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVHNVSAPF NFSLPPGFGH RATDKALSII LVLMLLLIML SLGCTMEFSK IKAHLWKPKG  60
   61 VIVALVAQFG IMPLAAFLLG KIFHLSNIEA LAILICGCSP GGNLSNLFTL AMKGDMNLSI 120
  121 VMTTCSSFSA LGMMPLLLYV YSKGIYDGDL KDKVPYKGIM ISLVIVLIPC TIGIVLKSKR 180
  181 PHYVPYILKG GMIITFLLSV AVTALSVINV GNSIMFVMTP HLLATSSLMP FSGFLMGYIL 240
  241 SALFQLNPSC RRTISMETGF QNIQLCSTIL NVTFPPEVIG PLFFFPLLYM IFQLAEGLLI 300
  301 IIIFRCYEKI KPPKDQTKIT YKAAATEDAT PAALEKGTHN GNIPPLQPGP SPNGLNSGQM 360
  361 AN