YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SL9A4_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.62
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.61
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	95	0.76
Transmembrane Helix	96	119	0.83
Cytoplasmic	120	128	0.38
Transmembrane Helix	129	146	0.62
Non-Cytoplasmic	147	157	0.70
Transmembrane Helix	158	181	0.92
Cytoplasmic	182	192	0.70
Transmembrane Helix	193	215	0.79
Non-Cytoplasmic	216	226	0.79
Transmembrane Helix	227	249	0.83
Cytoplasmic	250	266	0.83
Transmembrane Helix	267	291	0.88
Non-Cytoplasmic	292	311	0.81
Transmembrane Helix	312	333	0.87
Cytoplasmic	334	352	0.85
Transmembrane Helix	353	375	0.86
Non-Cytoplasmic	376	382	0.77
Transmembrane Helix	383	407	0.86
Cytoplasmic	408	421	0.83
Transmembrane Helix	422	445	0.88
Non-Cytoplasmic	446	452	0.73
Transmembrane Helix	453	475	0.84
Cytoplasmic	476	717	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPAMLRAFS SWKWLLLLMV LTCLEASSYV NESSSPTGQQ TPDARFAASS SDPDERISVF  60
   61 ELDYDYVQIP YEVTLWILLA SLAKIGFHLY HRLPHLMPES CLLIIVGALV GSIIFGTHHK 120
  121 SPPVMDSSIY FLYLLPPIVL ESGYFMPTRP FFENIGSILW WAGLGALINA FGIGLSLYFI 180
  181 CQIKAFGLGD INLLQNLLFG SLISAVDPVA VLAVFEEARV NEQLYMMIFG EALLNDGISV 240
  241 VLYNILIAFT KMHKFEDIEA VDILAGCARF VIVGCGGVFF GIIFGFISAF ITRFTQNISA 300
  301 IEPLIVFMFS YLSYLAAETL YLSGILAITA CAVTMKKYVE ENVSQTSYTT IKYFMKMLSS 360
  361 VSETLIFIFM GVSTVGKNHE WNWAFVCFTL AFCQIWRAIS VFTLFYVSNQ FRTFPFSIKD 420
  421 QLIIFYSGVR GAGSFSLAFL LPLTLFPRKK LFVTATLVVT YFTVFFQGIT IGPLVRYLDV 480
  481 RKTNKKESIN EELHIRLMDH LKAGIEDVCG QWSHYQVRDK FKKFDHRYLR KILIRRNQPK 540
  541 SSIVSLYKKL EMKQAIEMAE TGLLSSVASP TPYQSERIQG IKRLSPEDVE SMRDILTRNM 600
  601 YQVRQRTLSY NKYNLKPQTS EKQAKEILIR RQNTLRESLR KGQSLPWVKP AGTKNFRYLS 660
  661 FPYSNPQPAR RGARAAESTG NPCCWLLHFL LCRAMVEKIW GPGGQETQPR LLCRNLN