YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SL9A3_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.64
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.63
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	51	0.87
Transmembrane Helix	52	70	0.92
Cytoplasmic	71	81	0.66
Transmembrane Helix	82	99	0.94
Non-Cytoplasmic	100	106	0.56
Transmembrane Helix	107	127	0.79
Cytoplasmic	128	138	0.52
Transmembrane Helix	139	162	0.81
Non-Cytoplasmic	163	172	0.72
Transmembrane Helix	173	197	0.85
Cytoplasmic	198	204	0.74
Transmembrane Helix	205	228	0.76
Non-Cytoplasmic	229	247	0.78
Transmembrane Helix	248	271	0.91
Cytoplasmic	272	278	0.70
Transmembrane Helix	279	296	0.75
Non-Cytoplasmic	297	300	0.65
Transmembrane Helix	301	320	0.82
Cytoplasmic	321	337	0.77
Transmembrane Helix	338	356	0.90
Non-Cytoplasmic	357	365	0.58
Transmembrane Helix	366	389	0.85
Cytoplasmic	390	432	0.85
Transmembrane Helix	433	453	0.91
Non-Cytoplasmic	454	831	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWHPALGPGW KPLLALAVAV TSLRGVRGIE EEPNSGGSFQ IVTFKWHHVQ DPYIIALWIL  60
   61 VASLAKIVFH LSHKVTSVVP ESALLIVLGL VLGGIVWAAD HIASFTLTPT LFFFYLLPPI 120
  121 VLDAGYFMPN RLFFGNLGTI LLYAVIGTIW NAATTGLSLY GVFLSGLMGE LKIGLLDFLL 180
  181 FGSLIAAVDP VAVLAVFEEV HVNEVLFIIV FGESLLNDAV TVVLYNVFES FVTLGGDAVT 240
  241 GVDCVKGIVS FFVVSLGGTL VGVIFAFLLS LVTRFTKHVR IIEPGFVFVI SYLSYLTSEM 300
  301 LSLSAILAIT FCGICCQKYV KANISEQSAT TVRYTMKMLA SGAETIIFMF LGISAVDPVI 360
  361 WTWNTAFVLL TLVFISVYRA IGVVLQTWIL NRYRMVQLET IDQVVMSYGG LRGAVAYALV 420
  421 VLLDEKKVKE KNLFVSTTLI VVFFTVIFQG LTIKPLVQWL KVKRSEQREP KLNEKLHGRA 480
  481 FDHILSAIED ISGQIGHNYL RDKWSNFDRK FLSKVLMRRS AQKSRDRILN VFHELNLKDA 540
  541 ISYVAEGERR GSLAFIRSPS TDNMVNVDFS TPRPSTVEAS VSYFLRENVS AVCLDMQSLE 600
  601 QRRRSIRDTE DMVTHHTLQQ YLYKPRQEYK HLYSRHELTP NEDEKQDKEI FHRTMRKRLE 660
  661 SFKSAKLGIN QNKKAAKLYK RERAQKRRNS SIPNGKLPME NLAHNFTIKE KDLELSEPEE 720
  721 ATNYEEISGG IEFLASVTKD VASDSGAGID NPVFSPDEDL DPSILSRVPP WLSPGETVVP 780
  781 SQRARVQIPN SPSNFRRLTP FRLSNKSVDS FLQADGPEEQ LQPASPESTH M