YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM165_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	33	0.99
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	90	0.98
Transmembrane Helix	91	110	0.89
Cytoplasmic	111	126	0.83
Transmembrane Helix	127	150	0.92
Non-Cytoplasmic	151	156	0.84
Transmembrane Helix	157	175	0.94
Cytoplasmic	176	227	0.99
Transmembrane Helix	228	248	0.91
Non-Cytoplasmic	249	265	0.93
Transmembrane Helix	266	287	0.90
Cytoplasmic	288	297	0.74
Transmembrane Helix	298	317	0.96
Non-Cytoplasmic	318	323	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASARGSGR APTRRLLVLL LLPLLWAPAG VRAGPEEDLS HRNQEPPAPA QQLQPQPAAV  60
   61 QGLEPARAEK GFTPAAPVHT NREDAATQAN LGFIHAFVAA ISVIIVSELG DKTFFIAAIM 120
  121 AMRYNRLTVL AGAMLALALM TCLSVLFGYA TTVIPRVYTY YVSTALFAIF GIRMLREGLK 180
  181 MSPDEGQEEL EEVQAELKKK DEEFQRTKLL NGPDVETGTS TAIPQKKWLH FISPIFVQAL 240
  241 TLTFLAEWGD RSQLTTIVLA AREDPYGVAV GGTVGHCLCT GLAVIGGRMI AQKISVRTVT 300
  301 IIGGIVFLAF AFSALFISPE SGF