YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPR18_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIPSNRDQL ALSNGSHPEE YKIAALVFYS CIFLIGLLVN VTALWVFSCT TKKRTTVTIY  60
   61 MMNVALLDLV FILSLPFRMF YYAKGEWPFG DYFCHILGAL VVFYPSLALW LLALISADRY 120
  121 MAIVQPKYAK ELKNTGKAVL ACVGVWIMTL TTTVPLLLLD EDPDKASSPA TCLKISDIIH 180
  181 LKAVNVLNFT RLIFFFLIPL FIMIGCYVVI IHSLLRGQTS KLKPKVKEKS IRIIVTLLLQ 240
  241 VLACFVPFHI CFALLMLQGE ENSYSPWGAF TTFLMNLSTC LDVVLYYIVS KQFQARVISV 300
  301 MLYRNYLRSV RRKSVRSGSL RSLSNMNSEM L

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.94
Transmembrane Helix	25	47	0.94
Cytoplasmic	48	56	0.88
Transmembrane Helix	57	77	0.91
Non-Cytoplasmic	78	92	0.83
Transmembrane Helix	93	115	0.91
Cytoplasmic	116	135	0.91
Transmembrane Helix	136	159	0.88
Non-Cytoplasmic	160	192	0.97
Transmembrane Helix	193	215	0.92
Cytoplasmic	216	232	0.95
Transmembrane Helix	233	256	0.90
Non-Cytoplasmic	257	266	0.87
Transmembrane Helix	267	289	0.90
Cytoplasmic	290	331	0.97