YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FZD5_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.99
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	233	0.99
Transmembrane Helix	234	259	0.90
Cytoplasmic	260	270	0.92
Transmembrane Helix	271	292	0.91
Non-Cytoplasmic	293	312	0.88
Transmembrane Helix	313	342	0.77
Cytoplasmic	343	356	0.73
Transmembrane Helix	357	378	0.77
Non-Cytoplasmic	379	406	0.90
Transmembrane Helix	407	427	0.95
Cytoplasmic	428	447	0.90
Transmembrane Helix	448	470	0.91
Non-Cytoplasmic	471	502	0.96
Transmembrane Helix	503	524	0.92
Cytoplasmic	525	585	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARPDPSAPP SLLLLLLAQL VGRAAAASKA PVCQEITVPM CRGIGYNLTH MPNQFNHDTQ  60
   61 DEAGLEVHQF WPLVEIHCSP DLRFFLCSMY TPICLPDYHK PLPPCRSVCE RAKAGCSPLM 120
  121 RQYGFAWPER MSCDRLPVLG GDAEVLCMDY NRSEATTASP KSFPAKPTLP GPPGAPSSGG 180
  181 ECPSGGPSVC TCREPFVPIL KESHPLYNKV RTGQVPNCAV PCYQPSFSPD ERTFATFWIG 240
  241 LWSVLCFIST STTVATFLID MERFRYPERP IIFLSACYLC VSLGFLVRLV VGHASVACSR 300
  301 EHSHIHYETT GPALCTVVFL LVYFFGMASS IWWVILSLTW FLAAGMKWGN EAIAGYAQYF 360
  361 HLAAWLIPSV KSITALALSS VDGDPVAGVC YVGNQNLNSL RGFVLGPLVL YLLVGTLFLL 420
  421 AGFVSLFRIR SVIKQGGTKT DKLEKLMIRI GIFTLLYTVP ASIVVACYLY EQHYRESWEA 480
  481 ALTCACPGSD AGQPRAKPEY WVLMLKYFMC LVVGITSGVW IWSGKTLESW RRFTSRCCCS 540
  541 SRRGHKSGGA MVAGDYAEAS AALTGRTGPP GPAAAYHKQV SLSHV