YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATP4B_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALQEKKSC SQRMAEFRQY CWNPDTGQML GRTPARWVWI SLYYAAFYVV MTGLFALCIY  60
   61 VLMQTIDPYT PDYQDQLKSP GVTLRPDVYG ERGLQISYNI SENSSWAGLT HTLHSFLAGY 120
  121 TPASQQDSIN CSSEKYFFQE TFSAPNHTKF SCKFTADMLQ NCSGLVDPSF GFEEGKPCFI 180
  181 IKMNRIVKFL PSNNTAPRVD CTFQDDPQKP RKDIEPLQVQ YYPPNGTFSL HYFPYYGKKA 240
  241 QPHYSNPLVA AKFLNVPKNT QVLIVCKIMA DHVTFDNPHD PYEGKVEFKL TIQK

Type	Start	End	Confidence
Cytoplasmic	1	38	0.90
Transmembrane Helix	39	63	0.88
Non-Cytoplasmic	64	294	0.91