YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VPP1_RAT
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	400	0.96
Transmembrane Helix	401	425	0.88
Cytoplasmic	426	443	0.91
Transmembrane Helix	444	463	0.94
Non-Cytoplasmic	464	504	0.85
Transmembrane Helix	505	524	0.75
Cytoplasmic	525	539	0.79
Transmembrane Helix	540	562	0.90
Non-Cytoplasmic	563	570	0.82
Transmembrane Helix	571	593	0.89
Cytoplasmic	594	605	0.74
Transmembrane Helix	606	625	0.80
Non-Cytoplasmic	626	635	0.76
Transmembrane Helix	636	659	0.88
Cytoplasmic	660	742	0.97
Transmembrane Helix	743	765	0.70
Non-Cytoplasmic	766	773	0.62
Transmembrane Helix	774	797	0.86
Cytoplasmic	798	838	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGELFRSEEM TLAQLFLQSE AAYCCVSELE ELGKVQFRDL NPDVNVFQRK FVNEVRRCEE  60
   61 MDRKLRFVEK EIRKANIPIM DTGENPEVPF PRDMIDLEAN FEKIENELKE INTNQEALKR 120
  121 NFLELTELKF ILRKTQQFFD EMADPDLLEE SSSLLEPNEM GRGAPLRLGF VAGVINRERI 180
  181 PTFERMLWRV CRGNVFLRQA EIENPLEDPV TGDYVHKSVF IIFFQGDQLK NRVKKICEGF 240
  241 RASLYPCPET PQERKEMASG VNTRIDDLQM VLNQTEDHRQ RVLQAAAKNI RVWFIKVRKM 300
  301 KAIYHTLNLC NIDVTQKCLI AEVWCPVTDL DSIQFALRRG TEHSGSTVPS ILNRMQTNQT 360
  361 PPTYNKTNKF THGFQNIVDA YGIGTYREIN PAPYTVITFP FLFAVMFGDF GHGILMTLFA 420
  421 VWMVLRESRI LSQKNENEMF SMVFSGRYII LLMGLFSIYT GLIYNDCFSK SLNIFGSSWS 480
  481 VRPMFTIGNW TEETLLGSSV LQLNPAIPGV FGGPYPFGID PIWNIATNKL TFLNSFKMKM 540
  541 SVILGIIHML FGVSLSLFNH IYFKKPLNIY FGFIPEIIFM SSLFGYLVIL IFYKWTAYDA 600
  601 HSSRNAPSLL IHFINMFLFS YPESGNAMLY SGQKGIQCFL IVVAMLCVPW MLLFKPLILR 660
  661 HQYLRKKHLG TLNFGGIRVG NGPTEEDAEI IQHDQLSTHS EDAEEPTEDE VFDFGDTMVH 720
  721 QAIHTIEYCL GCISNTASYL RLWALSLAHA QLSEVLWTMV IHIGLHVRSL AGGLGLFFIF 780
  781 AAFATLTVAI LLIMEGLSAF LHALRLHWVE FQNKFYTGTG FKFLPFSFEH IREGKFDE