YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSR2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELTSEQFNG SQVWIPSPFD LNGSLGPSNG SNQTEPYYDM TSNAVLTFIY FVVCVVGLCG  60
   61 NTLVIYVILR YAKMKTITNI YILNLAIADE LFMLGLPFLA MQVALVHWPF GKAICRVVMT 120
  121 VDGINQFTSI FCLTVMSIDR YLAVVHPIKS AKWRRPRTAK MINVAVWGVS LLVILPIMIY 180
  181 AGLRSNQWGR SSCTINWPGE SGAWYTGFII YAFILGFLVP LTIICLCYLF IIIKVKSSGI 240
  241 RVGSSKRKKS EKKVTRMVSI VVAVFIFCWL PFYIFNVSSV SVAISPTPAL KGMFDFVVIL 300
  301 TYANSCANPI LYAFLSDNFK KSFQNVLCLV KVSGAEDGER SDSKQDKSRL NETTETQRTL 360
  361 LNGDLQTSI

Type	Start	End	Confidence
Non-Cytoplasmic	1	45	0.96
Transmembrane Helix	46	69	0.93
Cytoplasmic	70	79	0.89
Transmembrane Helix	80	101	0.87
Non-Cytoplasmic	102	123	0.80
Transmembrane Helix	124	144	0.87
Cytoplasmic	145	162	0.89
Transmembrane Helix	163	182	0.95
Non-Cytoplasmic	183	207	0.93
Transmembrane Helix	208	233	0.93
Cytoplasmic	234	253	0.97
Transmembrane Helix	254	275	0.94
Non-Cytoplasmic	276	292	0.91
Transmembrane Helix	293	315	0.73
Cytoplasmic	316	369	0.83